SMC
Version: 1.2.0
 
Login

BGC Info
Compound Name: Unknown
BGC Class(es): Polyketide, T2PKS
Source Info
Source: Salinispora tropica CNB-440 - tax_id: 369723 (SMC-4487)
Location: NC_009380.1: 2773928-2846443 (72,515 bp) download BGC sequence

Login to upload an annotation

Scale: Bars are 1000 base pairs              

RefSeq
Date: May 22, 2023 04:12:03 pm

Annotation id: 267356 download GFF for this track

Hide

antiSMASH
v7.0.0beta1-67b538a9
Date: May 22, 2023 04:12:03 pm

Annotation id: 267342 download GFF for this track

Hide

Emerald
v0.2.4.1
Date: May 22, 2023 04:12:03 pm

Annotation id: 267346 download GFF for this track

Hide

CDDSearch
Date: May 22, 2023 04:12:03 pm

Annotation id: 267352 download GFF for this track

Hide

InterProScan
Date: May 22, 2023 04:12:03 pm

Annotation id: 267347 download GFF for this track

Hide

           

Comments (1 post)


SMC Bot
May 22, 2023 04:12:03 pm
 

This BGC may be derived from merging overlapping BGC calls from multiple genome mining tools. The GFF attributes from the original BGC annotations are shown below in JSON format:

[
  {
    "SequenceID/Contig": "NC_009380.1",
    "start": "2773928",
    "end": "2846443",
    "annotation_tool": "antiSMASHv7.0.0beta1-67b538a9",
    "candidate_cluster_numbers": "12",
    "contig_edge": "False",
    "product": "T2PKS",
    "region_number": "10",
    "rules": "(t2ks and t2clf)",
    "tool": "antismash"
  },
  {
    "SequenceID/Contig": "NC_009380.1",
    "start": "2780074",
    "end": "2829593",
    "annotation_tool": "EMERALDv0.2.4.1",
    "ID": "NC_009380.1_emrld_7",
    "nearest_MiBIG": "BGC0001730",
    "nearest_MiBIG_class": "Polyketide",
    "nearest_MiBIG_diceDistance": "0.572",
    "score": "0.810",
    "partial": "00"
  }
]
 
 

   login to post or reply to a comment