SMC
Version: 1.2.0
 
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BGC Info
Compound Name: likely(salinosporamide A)
BGC Class(es): Polyketide, T1PKS, NRP, NRPS-like, Trans-AT PKS-like
Source Info
Source: Salinispora tropica CNB-440 - tax_id: 369723 (SMC-4487)
Location: NC_009380.1: 1131285-1243806 (112,521 bp) download BGC sequence

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Scale: Bars are 1000 base pairs              

RefSeq
Date: May 22, 2023 04:12:01 pm

Annotation id: 267237 download GFF for this track

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antiSMASH
v7.0.0beta1-67b538a9
Date: May 22, 2023 04:12:01 pm

Annotation id: 267225 download GFF for this track

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Emerald
v0.2.4.1
Date: May 22, 2023 04:12:01 pm

Annotation id: 267232 download GFF for this track

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CDDSearch
Date: May 22, 2023 04:12:01 pm

Annotation id: 267236 download GFF for this track

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InterProScan
Date: May 22, 2023 04:12:01 pm

Annotation id: 267234 download GFF for this track

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Comments (2 posts)


SMC Bot
May 22, 2023 04:12:01 pm


 

This BGC may be derived from merging overlapping BGC calls from multiple genome mining tools. The GFF attributes from the original BGC annotations are shown below in JSON format:

[
  {
    "SequenceID/Contig": "NC_009380.1",
    "start": "1131285",
    "end": "1180343",
    "annotation_tool": "antiSMASHv7.0.0beta1-67b538a9",
    "candidate_cluster_numbers": "4",
    "contig_edge": "False",
    "product": "transAT-PKS-like,NRPS-like,T1PKS",
    "region_number": "4",
    "rules": "cds(ATd and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS) and not PKS_AT),cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX)),cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))",
    "tool": "antismash"
  },
  {
    "SequenceID/Contig": "NC_009380.1",
    "start": "1133454",
    "end": "1243806",
    "annotation_tool": "EMERALDv0.2.4.1",
    "ID": "NC_009380.1_emrld_3",
    "nearest_MiBIG": "BGC0001041",
    "nearest_MiBIG_class": "NRP Polyketide",
    "nearest_MiBIG_diceDistance": "0.313",
    "score": "0.930",
    "partial": "00"
  }
]

 
 

Daniel Udwary
Aug 23, 2023 05:49:09 pm


 

This is the Salinosporamide A BGC

 
 

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