SMC
Version: 1.2.0
 
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BGC Info
Compound Name: likely(salinosporamide A)
BGC Class(es): Polyketide, T1PKS, NRP, NRPS-like, Trans-AT PKS-like
Source Info
Source: Salinispora tropica CNT250 - tax_id: 1169196 (SMC-219220)
Location: KK211116.1: 254556-361997 (107,441 bp) download BGC sequence

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Scale: Bars are 1000 base pairs              

GenBank
Date: Jun 08, 2023 03:39:47 pm

Annotation id: 12477707 download GFF for this track

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antiSMASH
v7.0.0beta1-67b538a9
Date: Jun 08, 2023 03:39:46 pm

Annotation id: 12477682 download GFF for this track

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Emerald
v0.2.4.1
Date: Jun 08, 2023 03:39:46 pm

Annotation id: 12477691 download GFF for this track

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CDDSearch
Date: Jun 08, 2023 03:39:47 pm

Annotation id: 12477704 download GFF for this track

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InterProScan
Date: Jun 08, 2023 03:39:46 pm

Annotation id: 12477692 download GFF for this track

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Comments (1 post)


SMC Bot
Jun 08, 2023 03:39:46 pm


 

This BGC may be derived from merging overlapping BGC calls from multiple genome mining tools. The GFF attributes from the original BGC annotations are shown below in JSON format:

[
  {
    "SequenceID/Contig": "KK211116.1",
    "start": "254556",
    "end": "361997",
    "annotation_tool": "EMERALDv0.2.4.1",
    "ID": "KK211116.1_emrld_1",
    "nearest_MiBIG": "BGC0001041",
    "nearest_MiBIG_class": "NRP Polyketide",
    "nearest_MiBIG_diceDistance": "0.381",
    "score": "0.940",
    "partial": "00"
  },
  {
    "SequenceID/Contig": "KK211116.1",
    "start": "310152",
    "end": "359998",
    "annotation_tool": "antiSMASHv7.0.0beta1-67b538a9",
    "candidate_cluster_numbers": "1",
    "contig_edge": "False",
    "product": "T1PKS,NRPS-like,transAT-PKS-like",
    "region_number": "1",
    "rules": "cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS)),cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX)),cds(ATd and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS) and not PKS_AT)",
    "tool": "antismash"
  }
]

 
 

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