SMC
Version: 1.2.0
 
Login

BGC Info
Compound Name: Unknown
BGC Class(es): Terpene
Source Info
Source: uncultured euryarchaeote - tax_id: 114243 (SMC-1359742)
Location: CAXHGM010000164.1: 1-2094 (2,093 bp) download BGC sequence

Login to upload an annotation

Scale: Bars are 1000 base pairs              

GenBank
Date: Aug 22, 2024 02:52:47 pm

Annotation id: 61848622 download GFF for this track

Hide

antiSMASH
v7.1.0
Date: Aug 22, 2024 02:52:47 pm

Annotation id: 61848618 download GFF for this track

Hide

Emerald
v0.2.4.1
Date: Aug 22, 2024 02:52:47 pm

Annotation id: 61848619 download GFF for this track

Hide

CDDSearch
Date: Aug 22, 2024 02:52:47 pm

Annotation id: 61848621 download GFF for this track

Hide

InterProScan
Date: Aug 22, 2024 02:52:47 pm

Annotation id: 61848620 download GFF for this track

Hide

           

Comments (1 post)


SMC Bot
Aug 22, 2024 02:52:47 pm


 

This BGC may be derived from merging overlapping BGC calls from multiple genome mining tools. The GFF attributes from the original BGC annotations are shown below in JSON format:

[
  {
    "SequenceID/Contig": "CAXHGM010000164.1",
    "start": "1",
    "end": "2094",
    "annotation_tool": "antiSMASHv7.1.0",
    "candidate_cluster_numbers": "1",
    "contig_edge": "True",
    "product": "terpene",
    "region_number": "1",
    "rules": "(Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)",
    "tool": "antismash"
  },
  {
    "SequenceID/Contig": "CAXHGM010000164.1",
    "start": "3",
    "end": "2093",
    "annotation_tool": "EMERALDv0.2.4.1",
    "ID": "CAXHGM010000164.1_emrld_1",
    "nearest_MiBIG": "BGC0000647",
    "nearest_MiBIG_class": "Terpene",
    "nearest_MiBIG_diceDistance": "0.200",
    "score": "0.910",
    "partial": "11"
  }
]

 
 

   login to post or reply to a comment