SMC
Version: 1.3.0
 
Login

BGC Info
Compound Name: Unknown
BGC Class(es): Redox cofactor
Source Info
Source: Pantoea ananatis LMG 20103 - tax_id: 706191 (SMC-1165303)
Location: NC_013956: 2064684-2086849 (22,165 bp) download BGC sequence

Login to upload an annotation

Scale: Bars are 1000 base pairs              

IMG
Date: Oct 20, 2023 10:11:43 am

Annotation id: 52623548 download GFF for this track

Hide

antiSMASH
v7.0.0beta1-67b538a9
Date: Oct 20, 2023 10:11:43 am

Annotation id: 52623543 download GFF for this track

Hide

CDDSearch
Date: Oct 20, 2023 10:11:43 am

Annotation id: 52623547 download GFF for this track

Hide

InterProScan
Date: Oct 20, 2023 10:11:43 am

Annotation id: 52623544 download GFF for this track

Hide

           

Comments (1 post)


SMC Bot
Oct 20, 2023 10:11:43 am


 

This BGC may be derived from merging overlapping BGC calls from multiple genome mining tools. The GFF attributes from the original BGC annotations are shown below in JSON format:

[
  {
    "SequenceID/Contig": "NC_013956",
    "start": "2064684",
    "end": "2086849",
    "annotation_tool": "antiSMASHv7.0.0beta1-67b538a9",
    "candidate_cluster_numbers": "6",
    "contig_edge": "False",
    "product": "redox-cofactor",
    "region_number": "6",
    "rules": "(cds(PF04055 and (TIGR04085 or SPASM)) and (TIGR02111 or TIGR03966) and minimum(1%2C [Bottromycin_Methyltransferase_RRE%2C Cyanobactin_D_RRE%2C Cytolysin_C_RRE%2C Goadsporin_CD_RRE%2C Heterocycloanthracin_C_RRE%2C Lanthipeptide_LanB_RRE%2C Lasso_Fused_RRE%2C Mycofactocin_RRE%2C NHLP_CD_RRE%2C Other_Sactipeptide_rSAM_RRE%2C Pantocin_Microcin_RRE%2C Plantazolicin_C_RRE%2C PlpY_RRE%2C PqqD_RRE%2C Proteusin_Epimerase_RRE%2C Proteusin_Methyltransferase_RRE%2C Quinohemoprotein_rSAM_RRE%2C Ranthipeptide_rSAM_RRE%2C Stand_Alone_Lasso_RRE%2C Streptide_RRE%2C Subtilosin_rSAM_RRE%2C Thiaglutamate_B_RRE%2C Thiaglutamate_G_RRE%2C Thiaglutamate_I_RRE%2C Thiopeptide_F_RRE%2C Thuricin_rSAM_RRE%2C Thurincin_rSAM_RRE%2C Trifolitoxin_RRE]))",
    "tool": "antismash"
  }
]

 
 

   login to post or reply to a comment