SMC
Version: 1.2.0
 
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BGC Info
Compound Name: Unknown
BGC Class(es): Polyketide, T1PKS
Source Info
Source: Salinispora tropica CNT250 - tax_id: 1169196 (SMC-108098)
Location: NZ_JHVW01000056.1: 1-3537 (3,536 bp) download BGC sequence

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Scale: Bars are 1000 base pairs              

RefSeq
Date: May 25, 2023 08:35:38 am

Annotation id: 5327154 download GFF for this track

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antiSMASH
v7.0.0beta1-67b538a9
Date: May 25, 2023 08:35:38 am

Annotation id: 5327146 download GFF for this track

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Emerald
v0.2.4.1
Date: May 25, 2023 08:35:38 am

Annotation id: 5327147 download GFF for this track

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CDDSearch
Date: May 25, 2023 08:35:38 am

Annotation id: 5327153 download GFF for this track

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InterProScan
Date: May 25, 2023 08:35:38 am

Annotation id: 5327149 download GFF for this track

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Comments (1 post)


SMC Bot
May 25, 2023 08:35:38 am


 

This BGC may be derived from merging overlapping BGC calls from multiple genome mining tools. The GFF attributes from the original BGC annotations are shown below in JSON format:

[
  {
    "SequenceID/Contig": "NZ_JHVW01000056.1",
    "start": "1",
    "end": "3537",
    "annotation_tool": "antiSMASHv7.0.0beta1-67b538a9",
    "candidate_cluster_numbers": "1",
    "contig_edge": "True",
    "product": "T1PKS",
    "region_number": "1",
    "rules": "cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))",
    "tool": "antismash"
  },
  {
    "SequenceID/Contig": "NZ_JHVW01000056.1",
    "start": "2",
    "end": "3536",
    "annotation_tool": "EMERALDv0.2.4.1",
    "ID": "NZ_JHVW01000056.1_emrld_1",
    "nearest_MiBIG": "BGC0000018",
    "nearest_MiBIG_class": "Polyketide",
    "nearest_MiBIG_diceDistance": "0.333",
    "score": "0.990",
    "partial": "11"
  }
]

 
 

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