SMC
Version: 1.2.0
 
Login

BGC Info
Compound Name: Unknown
BGC Class(es): Terpene, RiPP, LAP, Thiopeptide
Source Info
Source: Salinispora tropica CNT250 - tax_id: 1169196 (SMC-108098)
Location: NZ_JHVW01000022.1: 78985-137621 (58,636 bp) download BGC sequence

Login to upload an annotation

Scale: Bars are 1000 base pairs              

RefSeq
Date: May 25, 2023 08:35:35 am

Annotation id: 5326991 download GFF for this track

Hide

antiSMASH
v7.0.0beta1-67b538a9
Date: May 25, 2023 08:35:35 am

Annotation id: 5326982 download GFF for this track

Hide

Emerald
v0.2.4.1
Date: May 25, 2023 08:35:35 am

Annotation id: 5326985 download GFF for this track

Hide

CDDSearch
Date: May 25, 2023 08:35:35 am

Annotation id: 5326989 download GFF for this track

Hide

InterProScan
Date: May 25, 2023 08:35:35 am

Annotation id: 5326986 download GFF for this track

Hide

           

Comments (1 post)


SMC Bot
May 25, 2023 08:35:35 am


 

This BGC may be derived from merging overlapping BGC calls from multiple genome mining tools. The GFF attributes from the original BGC annotations are shown below in JSON format:

[
  {
    "SequenceID/Contig": "NZ_JHVW01000022.1",
    "start": "78985",
    "end": "133169",
    "annotation_tool": "antiSMASHv7.0.0beta1-67b538a9",
    "candidate_cluster_numbers": "2,3,4",
    "contig_edge": "False",
    "product": "terpene,LAP,thiopeptide",
    "region_number": "2",
    "rules": "(Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5),((((goadsporin_like or PF00881 or TIGR03605) and (YcaO or TIGR03604)) or TIGR03882 or TIGR03603 or TIGR03602) and not cyanobactin_synth),((YcaO or TIGR03604) and ((thio_amide and (PF06968 or PF04055 or PF07366)) or Lant_dehydr_C or Lant_dehydr_N or PF07366 or PF06968 or PF04055) or thiostrepton)",
    "tool": "antismash"
  },
  {
    "SequenceID/Contig": "NZ_JHVW01000022.1",
    "start": "97502",
    "end": "137621",
    "annotation_tool": "EMERALDv0.2.4.1",
    "ID": "NZ_JHVW01000022.1_emrld_1",
    "nearest_MiBIG": "BGC0000605",
    "nearest_MiBIG_class": "RiPP",
    "nearest_MiBIG_diceDistance": "0.663",
    "score": "0.730",
    "partial": "00"
  }
]

 
 

   login to post or reply to a comment